PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918048
Common NameARALYDRAFT_918048
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 223aa    MW: 24689.1 Da    PI: 8.9461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918048genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.4e-2051436127
     NAM   6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
              F+P+d++l+ + L+kk+++++   e+e+ ikevd++++eP+++p  ++ ++++ w+  s+ +k + + +r +r+ k+g+Wk  gk + +++  +g+++g kk
  918048   5 SFNPNDHDLI-DCLNKKITEEDgiSETESLIKEVDLCNHEPQEIPtLATMKSNHTWHIISPVRKLNGSCQRIKRSSKTGRWKVNGKCTIIKDVvTGKEIGSKK 106
             5*********.6799999988885455556***************5444456779*******************************888877678999***** PP

     NAM 105 tLvfy...........kgrapkge...ktdWvmheyr 127
              L f            ++++p+g    k+ W +hey+
  918048 107 YLDFMlkekknpssssSASSPRGMqriKSGWSIHEYS 143
             *****877666655442333333355599******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.711163IPR003441NAC domain
SuperFamilySSF1019411.7E-255163IPR003441NAC domain
PfamPF023651.1E-95143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSLHSFNPND HDLIDCLNKK ITEEDGISET ESLIKEVDLC NHEPQEIPTL ATMKSNHTWH  60
IISPVRKLNG SCQRIKRSSK TGRWKVNGKC TIIKDVVTGK EIGSKKYLDF MLKEKKNPSS  120
SSSASSPRGM QRIKSGWSIH EYSSFIEDEP KKDAFVLCKL RKKATAVGEA SQAVAAAVTD  180
PAITPNHAVD ASSAAAAVTH PPMVTPNEVW KNKHINYLYL EY*
Cis-element ? help Back to Top
SourceLink
PlantRegMap918048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633377.15e-51NAC domain-containing protein 62
TrEMBLD7MQ541e-164D7MQ54_ARALL; Uncharacterized protein
STRINGscaffold_801448.11e-165(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.18e-25NAC domain containing protein 49