PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

918081

Common Name

ARALYDRAFT_918081

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 211aa MW: 23150.1 Da PI: 5.037

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
918081	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	143.9	3.6e-45	46	144	1	99
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 q +++w+++ ++a+d+k++e+Plarikki+k+d +v++++aeaP+l+skace++il+lt++swlh+ e +r+tlk+sdi+aavtr +f+fl d+vprd 918081 46 QTQNYWIERTGNASDVKHNEFPLARIKKIMKSDANVQKVTAEAPILISKACEMLILDLTMQSWLHTVEGRRETLKRSDISAAVTRDLKFTFLGDVVPRD 144 5699*********************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.05E-23	53	156	IPR009072	Histone-fold
Pfam	PF00808	1.7E-17	65	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.4E-28	66	143	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEENNGTNHH QWPQQSSSQQ LPPPSYSQPL PSPLYSLPPP YSLQTQTQNY WIERTGNASD 60 VKHNEFPLAR IKKIMKSDAN VQKVTAEAPI LISKACEMLI LDLTMQSWLH TVEGRRETLK 120 RSDISAAVTR DLKFTFLGDV VPRDPSVVTA YPVPKPHPEG EVLPPGMVIG HPVFGCNCTY 180 APPPQMQEWP AVPDDGEEAA EEIGGSSGGN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-30	47	143	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	121	ETLKRS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	918081

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871301.1	1e-156	nuclear transcription factor Y subunit C-7
Swissprot	Q9FGP8	1e-97	NFYC7_ARATH; Nuclear transcription factor Y subunit C-7
TrEMBL	D7MQ84	1e-154	D7MQ84_ARALL; Uncharacterized protein
STRING	scaffold_801481.1	1e-155	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20210	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50470.1	1e-78	nuclear factor Y, subunit C7

Link Out ? help Back to Top
Phytozome	918081
Entrez Gene	9301883

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]