PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

918084

Common Name

ARALYDRAFT_918084

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 175aa MW: 19275.7 Da PI: 4.0957

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
918084	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.2	1e-52	17	116	1	100
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 qlksfw+k++e + d+knhe+Pl+rik+i+k+d+dv+mi+aeaP+l+skace+fi+++t+rswlha+e kr t+kksd+aaav rt ifdfl+d+v ++e 918084 17 QLKSFWSKEMEGDLDLKNHEFPLSRIKRIMKFDPDVNMIAAEAPILFSKACEMFIMDVTMRSWLHAQERKRLTIKKSDVAAAVDRTLIFDFLLDVVNEEE 116 89**********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.01E-29	2	108	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.3E-31	31	99	IPR009072	Histone-fold
Pfam	PF00808	6.4E-19	36	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MENNNHQQPP QPQDNEQLKS FWSKEMEGDL DLKNHEFPLS RIKRIMKFDP DVNMIAAEAP 60 ILFSKACEMF IMDVTMRSWL HAQERKRLTI KKSDVAAAVD RTLIFDFLLD VVNEEEGESF 120 PAAADPVAVP CLDDGELPQG MVIGTPVCCG LPAWTAAPGE EEDADGENGG DSGN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-36	24	112	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	918084

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865812.1	1e-127	nuclear transcription factor Y subunit C-8
Swissprot	Q4PSE2	2e-82	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	D7MQ87	1e-126	D7MQ87_ARALL; Uncharacterized protein
STRING	scaffold_801484.1	1e-126	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	2e-72	nuclear factor Y, subunit C8

Link Out ? help Back to Top
Phytozome	918084
Entrez Gene	9301886

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]