PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918406
Common NameARALYDRAFT_918406
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 347aa    MW: 39166.1 Da    PI: 4.2532
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918406genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20122172155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             ++++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  918406 122 KKFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 172
             59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.21E-34122179No hitNo description
Gene3DG3DSA:3.30.730.103.1E-30123180IPR001471AP2/ERF domain
PfamPF008474.2E-12123172IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21123181IPR016177DNA-binding domain
PROSITE profilePS5103223.775123180IPR001471AP2/ERF domain
SMARTSM003801.7E-39123186IPR001471AP2/ERF domain
PRINTSPR003672.5E-10124135IPR001471AP2/ERF domain
PRINTSPR003672.5E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGDQSLRKVS ICYTDPDATD SSSDEDEEDF  60
LFPRRRVKRF VNEITVEPSC NNIVTGVSMK DRKRLSSSSD DTQSPASSRQ RPNKVSVSGQ  120
IKKFRGVRQR PWGKWAAEIR DPEQRRRIWL GTFETAEEAA VVYDNAAIRL RGPDALTNFS  180
IPPQEEEEEE EEPEPVVPTM TTTTTSSSES TEDFQHLSSP TSVLNLRSEE IQQVQQPFKS  240
AKPEPEISNA PWWHTGFNTG LGESDDSFPL DTPFLDNYFN ESPPEMSIFD QPMGQVFTEN  300
DDIFNAMFLG SGETMNIGDD LTSSSINDIG SKFSDFDDLI LDLLVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22122181161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133880.0AB013388.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1.
GenBankAY5608780.0AY560878.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g53290) mRNA, complete cds.
GenBankBT0202440.0BT020244.1 Arabidopsis thaliana At5g53290 gene, complete cds.
GenBankBT0211360.0BT021136.1 Arabidopsis thaliana At5g53290 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865967.10.0ethylene-responsive transcription factor CRF3
SwissprotQ9FK120.0CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLD7MSX00.0D7MSX0_ARALL; Uncharacterized protein
STRINGscaffold_801806.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-173cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]