PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918562
Common NameARALYDRAFT_918562
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 98aa    MW: 11410.9 Da    PI: 7.2546
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918562genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind62.41.1e-191482270
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeek 70
                  F kkly+i++d+++++++sws+ngnsf++++e+ef ++vLp++   +++a F+R L   gFkkv++ee 
        918562 14 FRKKLYKIVDDPSTNSIVSWSNNGNSFIIWNESEFCRDVLPRFSHYKEMAPFIRRLGNMGFKKVESEEL 82
                  889***************************************9999******************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-22690IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-161097IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-201292IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-101437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-171480IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-105264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-106577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MDRENNGKDR CRYFRKKLYK IVDDPSTNSI VSWSNNGNSF IIWNESEFCR DVLPRFSHYK  60
EMAPFIRRLG NMGFKKVESE ELEYGSDDFV LGLMGLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-157772292Heat shock factor protein 1
5d5v_B8e-157772292Heat shock factor protein 1
5d5v_D8e-157772292Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap918562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523429.11e-23heat stress transcription factor A-4c
RefseqXP_017416796.11e-23PREDICTED: heat stress transcription factor A-4c-like
TrEMBLD7MU839e-66D7MU83_ARALL; Uncharacterized protein
STRINGscaffold_801962.11e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-21HSF family protein