PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

918675

Common Name

ARALYDRAFT_918675

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 160aa MW: 17860.4 Da PI: 10.5193

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
918675	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32.2	2.4e-10	48	75	25	50
G2-like 25 ekAtPktilelmkv..kgLtlehvkSHL 50 +AtPk+i++lmkv +gLt+++vkSHL 918675 48 AVATPKQIRDLMKVkvDGLTNDEVKSHL 75 579*******85227********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.565.10	1.1E-12	2	48	IPR003594	Histidine kinase-like ATPase, C-terminal domain
SuperFamily	SSF55874	9.03E-7	2	49	IPR003594	Histidine kinase-like ATPase, C-terminal domain
Gene3D	G3DSA:1.10.10.60	1.0E-6	49	75	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MALDKIRFES LTDKSKLDGQ PELFLHIIPD KTNNTLNIID SVIGMTKAVA TPKQIRDLMK 60 VKVDGLTNDE VKSHLHIAHK KTSYSGSNKR WRNPQQLQFM VVEGIWVLSH DTTNNRVYAL 120 VAVQSSPSGE RSRRRCKSPT TSSTHTTPSS SIIDSSRFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4x9l_A	6e-20	2	48	77	123	Heat shock protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	918675

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011476	2e-49	AB011476.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7.
GenBank	CP002688	2e-49	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	Y11828	2e-49	Y11828.1 A.thaliana hsp81.4 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002885980.1	8e-80	transcription factor HHO3
Swissprot	Q9FPE8	8e-28	HHO3_ARATH; Transcription factor HHO3
TrEMBL	D7MKG5	1e-114	D7MKG5_ARALL; Uncharacterized protein
STRING	scaffold_802075.1	1e-114	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	3e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	918675
Entrez Gene	9302162

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]