PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918808
Common NameARALYDRAFT_918808
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 134aa    MW: 14997 Da    PI: 10.5127
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918808genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.99e-15104988128
     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
             + k++++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
  918808  10 NVKTITA-DGRRVGIKKALVFYAGKAPKGTKTNWIMHEYRL 49 
             4456666.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.372182IPR003441NAC domain
SuperFamilySSF1019418.5E-161058IPR003441NAC domain
PfamPF023651.0E-61549IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MFDKPNQEKN VKTITADGRR VGIKKALVFY AGKAPKGTKT NWIMHEYRLI EHSRSHGSSK  60
KTSGSQRQAV TTPVQACREE HSTNGSSSSS SSQLDDVLDS FPEIKDQSFN LPRMNSLIYN  120
EVKKKIKEKI KNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-211260108156NAC domain-containing protein 19
3swm_B6e-211260108156NAC domain-containing protein 19
3swm_C6e-211260108156NAC domain-containing protein 19
3swm_D6e-211260108156NAC domain-containing protein 19
3swp_A6e-211260108156NAC domain-containing protein 19
3swp_B6e-211260108156NAC domain-containing protein 19
3swp_C6e-211260108156NAC domain-containing protein 19
3swp_D6e-211260108156NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918808
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0837381e-77AF083738.1 Arabidopsis thaliana clone sps433 unknown mRNA.
GenBankAY0877721e-77AY087772.1 Arabidopsis thaliana clone 38344 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871457.12e-72NAC domain-containing protein 72, partial
SwissprotQ93VY35e-61NAC72_ARATH; NAC domain-containing protein 72
TrEMBLD7MLT12e-94D7MLT1_ARALL; Uncharacterized protein
STRINGscaffold_802208.14e-95(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.25e-62NAC family protein
Publications ? help Back to Top
  1. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  2. Li S, et al.
    The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence.
    Plant Cell Rep., 2016. 35(8): p. 1729-41
    [PMID:27154758]
  3. Ye H, et al.
    RD26 mediates crosstalk between drought and brassinosteroid signalling pathways.
    Nat Commun, 2017. 8: p. 14573
    [PMID:28233777]