PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 918997
Common NameARALYDRAFT_918997
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 446aa    MW: 50272 Da    PI: 9.7401
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
918997genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.74.5e-2747100255
  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              +r +Wt eLH++Fv+av+qLGG +kA P +i  lm+v+gL + +v+SHLQkYRl
   918997  47 KRTVWTVELHQKFVNAVQQLGGVDKASPEQIHALMNVEGLPVINVASHLQKYRL 100
              699**************************************************8 PP
2G2-like85.26.5e-27342394355
  G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              r++W++eLH++F++a++qLGG++kA+Pk+il +m+v+gLt+ +v+ HLQkYR 
   918997 342 RVVWSHELHQKFLHAIDQLGGNDKAIPKKILAVMNVEGLTRLNVATHLQKYRQ 394
              99**************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.11743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2544105IPR009057Homeodomain-like
SuperFamilySSF466891.56E-1544104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2147100IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.5E-24337394IPR009057Homeodomain-like
PROSITE profilePS5129411.96337397IPR017930Myb domain
SuperFamilySSF466898.25E-17340395IPR009057Homeodomain-like
PfamPF002498.4E-6342393IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-22342394IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MKFLLPPSES HLVPSLSKKQ NEDDSDRKEE DGKGNEHNGM ESCTRMKRTV WTVELHQKFV  60
NAVQQLGGVD KASPEQIHAL MNVEGLPVIN VASHLQKYRL YLKKIDEGQQ LYMATRQLLL  120
SAGSHLPQTP STKHCSSFIQ QGHHQNSSNS ANPSETYHTT LSPRVQKVNT FQPSSSPLKP  180
LLFPKSNISA YKEDFKGIKD TANVGNSSID SSKPRNSFQT ASKFPKTDPC TGSYIIDIMT  240
EPYYYGKASR RHRFFFPMLL AAGDCDLNQI KTLITEAEHS LLIYHRTPLP RVEKVNLSQP  300
SSNPLEPLVF PKSNFSAYMG DFKSIKEPEI VQESRTRKNH GRVVWSHELH QKFLHAIDQL  360
GGNDKAIPKK ILAVMNVEGL TRLNVATHLQ KYRQCCSTEA QQLNMATRKL PSSEHLPQSP  420
STNHHSSLSP RVQDVNIRFN QLHLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14336393157ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap918997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240299e-38AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026889e-38CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877923.13e-87two-component response regulator ARR18
SwissprotQ9FGT78e-54ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK60.0D7MPK6_ARALL; Predicted protein
STRINGscaffold_802397.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2319824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.18e-48response regulator 18