PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

91900

Common Name

ABI5B-1, SELMODRAFT_91900

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 296aa MW: 32632.5 Da PI: 6.9814

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
91900	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	7.1e-15	245	286	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r+rr++kNRe+A rsR+RK+a++ eLe + +L++eN++Lk 91900 245 RRQRRMIKNRESAARSRARKQAYTVELEAELTQLKEENTRLK 286 79*************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	241	292	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	243	295	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-14	245	287	No hit	No description
Pfam	PF00170	2.5E-12	245	286	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.19E-25	245	295	No hit	No description
SuperFamily	SSF57959	1.56E-10	245	287	No hit	No description
PROSITE pattern	PS00036	0	248	263	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLHPPPNGGV GPQRSGLGRQ GSIYSLTLEE LQNSMLDQGK IGSMNMDEFM KNVWTAEENQ 60 GGAANTNTST ATSTATDNPP APSSLQRQSS VSIPRTLSQK TVDEVWKEIQ VQKQQQQQQD 120 LSYGEMTLED FLIRAGVVKE DTDATSGGVV QAIGPQGTIP NSIDSMAQNP DWYNYQVKQQ 180 QLMHQAADFS KRPNLIVPAG HPGAFFDAPY DAVPSSLALS PGMATPEAPG KKRSLDLVVE 240 KTVERRQRRM IKNRESAARS RARKQAYTVE LEAELTQLKE ENTRLKRWQV RLDHS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002969410.2	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_024529938.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	D8RET6	0.0	D8RET6_SELML; Uncharacterized protein ABI5B-1
STRING	EFJ29498	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-49	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	91900
Entrez Gene	9660050

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]