PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919218
Common NameARALYDRAFT_919218
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 163aa    MW: 17415.2 Da    PI: 10.3469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001982104123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+Cg  F+    L  H+r+H
   919218  82 HPCPICGVEFPMGQALGGHMRRH 104
              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-637104No hitNo description
PfamPF139128.0E-123863IPR007087Zinc finger, C2H2
SMARTSM003552.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9543966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.07982104IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-1182105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68182109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVARSDIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFR CKTCLKEFHS FQALGGHRAS  60
HKKPNNDTLS SGLVKKVKTT SHPCPICGVE FPMGQALGGH MRRHRNESGA GGGALVTRAL  120
LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap919218
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154750.0AB015475.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.
GenBankAY0509150.0AY050915.1 Arabidopsis thaliana putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankAY1338180.0AY133818.1 Arabidopsis thaliana clone U11346 putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX986730.0X98673.1 A.thaliana mRNA for ZAT12 protein.
GenBankX986740.0X98674.1 A.thaliana zat12 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864652.11e-116zinc finger protein ZAT12
SwissprotQ424101e-112ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLD7MT321e-115D7MT32_ARALL; Uncharacterized protein
STRINGscaffold_802618.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  3. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  4. Le CT, et al.
    ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses.
    Plant Physiol., 2016. 170(1): p. 540-57
    [PMID:26556796]
  5. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  6. Tang Y, et al.
    Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana.
    Environ. Pollut., 2016. 212: p. 605-614
    [PMID:27016889]
  7. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  8. Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL
    Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays.
    Plant Physiol. Biochem., 2017. 117: p. 51-60
    [PMID:28587993]
  9. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]