PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919255
Common NameARALYDRAFT_919255
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 244aa    MW: 27855.1 Da    PI: 8.3489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919255genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1714103195
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
             ffkv       + + lvlp +f  ++ ++k+ + t+t+++  g++W++ l  rk++++   +v+ +GWk+Fvk+ +Lk gDf+ F++dg++ f  ++ 
  919255  14 FFKVY--LPDESGDDLVLPISFN-SC-LPKPLPETVTVRSIYGKVWKLVL--RKCGSEvesFVMVNGWKSFVKDEDLKGGDFLEFEFDGSRLF--NFC 103
             67777..44555667*******7.67.5677999****************..666666668*************************9986666..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-2111106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1812106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.09812108IPR003340B3 DNA binding domain
CDDcd100173.68E-1712105No hitNo description
PfamPF023627.8E-1614104IPR003340B3 DNA binding domain
SMARTSM010191.4E-1814108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-8139230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-10139228IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNKGNFGDYC LPKFFKVYLP DESGDDLVLP ISFNSCLPKP LPETVTVRSI YGKVWKLVLR  60
KCGSEVESFV MVNGWKSFVK DEDLKGGDFL EFEFDGSRLF NFCIYEHGTL CKRIRRSSEQ  120
SEEIKMESDS DEKNQYLDDR ENPSFTLTLN PKKKSQLLIP ARVIKDYDLH FPESITLVDP  180
LVNKFGTLEK KIKIQTNGSV FVKGFGSIIR RNQVKTTDKM MCEIKKTGDN NLVQTIKIHI  240
ISG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1441071101At1g16640
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap919255
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0567301e-151DQ056730.1 Arabidopsis thaliana transcriptional factor B3 family protein (At5g60130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190577.11e-132AP2/B3-like transcriptional factor family protein
SwissprotQ9LVG11e-67Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLD7MT681e-177D7MT68_ARALL; Uncharacterized protein
STRINGscaffold_802655.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.21e-135B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]