PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919257
Common NameARALYDRAFT_919257
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 222aa    MW: 25707.2 Da    PI: 10.297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919257genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.8e-1314104194
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
             ffkv       + + l lp +f +   ++k  +k +++++  g+ W++ l+  +++ +r+++ +GWk+ vk  +Lk g+f+ F++dg+ +f++++
  919257  14 FFKVY--LPDESGDDLELPISFNSF--LPKSLPKNVIVRSIYGNIWKMALKKcCGHVERFTMVNGWKKIVKNEDLKGGEFLEFEFDGSWCFNFCI 104
             66777..445555669999999743..56779999***************444666666**************************9988886555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1811107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.01112108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-1412106IPR015300DNA-binding pseudobarrel domain
CDDcd100177.18E-1212105No hitNo description
PfamPF023627.5E-1114104IPR003340B3 DNA binding domain
SMARTSM010193.1E-1114108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.67E-10122220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-5125220IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.075127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNRGNSGGNC LPKFFKVYLP DESGDDLELP ISFNSFLPKS LPKNVIVRSI YGNIWKMALK  60
KCCGHVERFT MVNGWKKIVK NEDLKGGEFL EFEFDGSWCF NFCIYGRATF KKLRSSVHYL  120
DNHMNPFFTV NQHRQIKYNL LRIPTKVITK SGLHFPEFIN LIDPLEKMFG KLKRKVEGQT  180
IKGFRSIIRR NNVKLTDKVI CELVKEMDGL VREIKVHVIR G*
Cis-element ? help Back to Top
SourceLink
PlantRegMap919257
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266321e-102AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
GenBankCP0026881e-102CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888769.15e-81B3 domain-containing protein At5g60142 isoform X2
SwissprotQ9LST38e-69Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLD7MT701e-160D7MT70_ARALL; Uncharacterized protein
STRINGscaffold_802657.11e-161(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.13e-71B3 family protein