PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

920093

Common Name

ARALYDRAFT_920093

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

SRS

Protein Properties

Length: 335aa MW: 36070.6 Da PI: 7.4581

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
920093	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.3	8e-72	117	266	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslP 106 g+ sCqdCGnq+kkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla+ ++ +++ + e+ +kr+re+ ++++++l +t++++++++ le+ ++P 920093 117 GGPSCQDCGNQSKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRERQQQLASGQQPQSQPQGESVPKRQREHIQATTTSLVCTRIPTNNTS-VLEVGNFP 218 6789***********************************************************************************99866.899999 PP DUF702 107 eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +ev+s+avfrcvrvssvdd+eee+aY+tavsigGhvf+GiLydqG++e 920093 219 PEVRSPAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFRGILYDQGPAE 266 *********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-65	118	265	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-26	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-26	217	264	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MAGFFSLEQG GGRNSQDEHN HHRTNTTNPS SSGTESWLWC RNPNSNADGG EVAPSYKGTL 60 ELWQHPNNQE IIFQQQQQER LDLYTSAAGL GVGPSNRSLI ETSGGALMMM RSSSGGGGPS 120 CQDCGNQSKK DCAHMRCRTC CKSRGLECPT HVKSTWVPAA KRRERQQQLA SGQQPQSQPQ 180 GESVPKRQRE HIQATTTSLV CTRIPTNNTS VLEVGNFPPE VRSPAVFRCV RVSSVDDEEE 240 EYAYKTAVSI GGHVFRGILY DQGPAERSSS GGGSQPLNLI TAGPSASSSS PNVSCNNGVV 300 GSTSDHYIDP ASLNYPTPIN TFMTGTHFFS NSRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	920093

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF152555	0.0	AF152555.1 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865074.2	0.0	protein SHORT INTERNODES
Swissprot	Q9XGX0	0.0	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	D7MMY6	0.0	D7MMY6_ARALL; Uncharacterized protein
STRING	scaffold_803493.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	1e-155	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	920093
Entrez Gene	9302832

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]