PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

920151

Common Name

ARALYDRAFT_338787

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 189aa MW: 22067.6 Da PI: 10.4031

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
920151	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.8	7.7e-27	68	117	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl 920151 68 NSLSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 117 67999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.656	53	137	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-22	70	117	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSGWWNDNNG NYNNQVEPIL DDISRTNTMG DPKMEKILHE DVNTTIKEKT SQKRIIMKRR 60 YREDGDINSL SREMMKQYFY MPITKAAKEL NIGVTLLKKR CRELGIPRWP HRKLTSLNAL 120 ITNLKDLLGN TEGKTPKSKL RNALELLEME KKMIEEVPDL EFGDKTKRLR QACFKAKYKQ 180 RRLFSSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	920151

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-164	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-164	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002862166.2	1e-138	protein RKD3, partial
Refseq	XP_002888458.1	1e-137	protein RKD3
Swissprot	Q9FGD1	1e-117	RKD3_ARATH; Protein RKD3
TrEMBL	D7KT00	1e-136	D7KT00_ARALL; Uncharacterized protein
TrEMBL	D7MYF9	1e-136	D7MYF9_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_2000886	1e-137	(Arabidopsis lyrata)
STRING	scaffold_103100001.1	1e-137	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-105	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	920151
Entrez Gene	9323044

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]