PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

920340

Common Name

ARALYDRAFT_920340

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRAS

Protein Properties

Length: 127aa MW: 14263.5 Da PI: 6.5202

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
920340	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	38.8	1.3e-12	4	75	212	289
GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErel 289 rl+d + + e+L+++++l+P++++vveq +++ +++sFl rf+eal+yy + + +l++es er +vE+ + 920340 4 RLYDVTRND----LETLEILRRLKPNLITVVEQKLSYdDGGSFLGRFVEALQYYYS---ARGDGLGEESGERFTVEQIV 75 444322222....569*******************8999*********9865...45777788899999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.5E-10	4	75	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MQHRLYDVTR NDLETLEILR RLKPNLITVV EQKLSYDDGG SFLGRFVEAL QYYYSARGDG 60 LGEESGERFT VEQIVSSCAV VIMGSRLALA MALFHGLSLL PNPNQVISFT FFFLFGFKIS 120 LSIVKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-18	1	73	219	292	Protein SCARECROW
5b3h_D	3e-18	1	73	219	292	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	920340

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ183206	9e-60	FJ183206.1 Capsella rubella isolate CumbredorsalTeneriffaEspania1209_36 At5g41920-like protein gene, partial cds.
GenBank	FJ183207	9e-60	FJ183207.1 Capsella rubella isolate BuenosAiresArgentina1377_10A At5g41920-like protein gene, partial cds.
GenBank	FJ183208	9e-60	FJ183208.1 Capsella rubella isolate CalderadeTaburienteLaPalmaEspania1504_8 At5g41920-like protein gene, partial cds.
GenBank	FJ183209	9e-60	FJ183209.1 Capsella rubella isolate CumbredorsalTeneriffaEspania1209_38A At5g41920-like protein gene, partial cds.
GenBank	FJ183210	9e-60	FJ183210.1 Capsella rubella isolate IoaninnaGreece925_6 At5g41920-like protein gene, partial cds.
GenBank	FJ183211	9e-60	FJ183211.1 Capsella rubella isolate CalderadeTaburienteLaPalmaEspania1504_10 At5g41920-like protein gene, partial cds.
GenBank	FJ183212	9e-60	FJ183212.1 Capsella rubella isolate PicodelIglesTeneriffa1204_2 At5g41920-like protein gene, partial cds.
GenBank	FJ183213	9e-60	FJ183213.1 Capsella rubella isolate BuenosAiresArgentina1377_2A At5g41920-like protein gene, partial cds.
GenBank	FJ183214	9e-60	FJ183214.1 Capsella rubella isolate CumbredorsalTeneriffaEspania1209_26 At5g41920-like protein gene, partial cds.
GenBank	FJ183215	9e-60	FJ183215.1 Capsella rubella isolate CalderadeTaburienteLaPalmaEspania1504_2A At5g41920-like protein gene, partial cds.
GenBank	FJ183216	9e-60	FJ183216.1 Capsella rubella isolate BuenosAiresArgentina1377_5A At5g41920-like protein gene, partial cds.
GenBank	FJ183217	9e-60	FJ183217.1 Capsella rubella isolate IoaninnaGreece925_3 At5g41920-like protein gene, partial cds.
GenBank	FJ183218	9e-60	FJ183218.1 Capsella rubella isolate CumbredorsalTeneriffaEspania1209_24 At5g41920-like protein gene, partial cds.
GenBank	FJ183223	9e-60	FJ183223.1 Capsella grandiflora isolate MetsovoGreece934_31 At5g41920-like protein gene, partial cds.
GenBank	FJ183225	9e-60	FJ183225.1 Capsella grandiflora isolate KatarapassGreece933_14 At5g41920-like protein gene, partial cds.
GenBank	FJ183227	9e-60	FJ183227.1 Capsella grandiflora isolate KatarapassGreece933_18 At5g41920-like protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199007.1	1e-37	GRAS family transcription factor
Swissprot	Q9FHZ1	1e-38	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	D7MWV4	2e-86	D7MWV4_ARALL; Uncharacterized protein
STRING	scaffold_21300003.1	4e-87	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	4e-41	GRAS family protein

Link Out ? help Back to Top
Phytozome	920340
Entrez Gene	9298798

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]