PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 920430
Common NameARALYDRAFT_920430
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 179aa    MW: 21548.3 Da    PI: 11.4359
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
920430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-1166118355
             XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
             +lk+  r ++NRe ArrsR RKk++ieeL++ vk+L   N+ L +++ +  + 
  920430  66 SLKKSSRNISNREYARRSRMRKKKQIEELQQQVKQLMMLNHHLHEKVINFLES 118
             689****************************************9998665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-966116No hitNo description
SMARTSM003382.6E-666128IPR004827Basic-leucine zipper domain
PfamPF001702.9E-1066126IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.47366129IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.13E-967122No hitNo description
CDDcd147022.43E-872112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MHCGGSRNEA SGSAYQRAHE HKERREYRNL WRRRGRSGGN EFRDDWNLMR RWLLHLRRPN  60
RRRYYSLKKS SRNISNREYA RRSRMRKKKQ IEELQQQVKQ LMMLNHHLHE KVINFLESNH  120
QILHENSQLK EKASSFHLLM ADVLLPMRIA ESNINDRNVN YLRGETSNRP TNSPFDNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMap920430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154721e-130AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBankCP0026881e-130CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889024.13e-62basic leucine zipper 43
TrEMBLD7MX251e-127D7MX25_ARALL; Uncharacterized protein
STRINGscaffold_26900003.11e-127(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.13e-61basic leucine-zipper 70