PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 920502
Common NameARALYDRAFT_920502
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 79aa    MW: 9397.28 Da    PI: 4.3844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
920502genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.3e-111539226
             -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
             k  +C+++ +tG+C+y d+CkF H+
   920502 15 KPDICKDYKETGYCRYRDSCKFLHD 39
             6789********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-121244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-91245IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-51340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.541341IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-81539IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MLDADEEDAE FQKAKPDICK DYKETGYCRY RDSCKFLHDH RDYKPGWQIE KDCEEVEKVW  60
KRNKAMGVED EDDNDTDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-141555198238RING finger protein 113A
5z58_M2e-141555198238RING finger protein 113A
6ff4_t2e-141555198238RING finger protein 113A
6ff7_t2e-141555198238RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap920502
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934198e-59AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
GenBankAC0236288e-59AC023628.3 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence.
GenBankAK2275068e-59AK227506.1 Arabidopsis thaliana mRNA for putative polyamine oxidase, complete cds, clone: RAFL14-12-M14.
GenBankCP0026848e-59CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.12e-27zinc finger CCCH domain-containing protein 1
RefseqXP_010457136.12e-27PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_010457137.12e-27PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_023645143.12e-27zinc finger CCCH domain-containing protein 1
SwissprotQ8GX847e-25C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG61e-24C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLD7MX782e-49D7MX78_ARALL; Uncharacterized protein
STRINGscaffold_30000002.13e-50(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.13e-27C3H family protein