PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

920531

Common Name

ARALYDRAFT_920531

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 195aa MW: 22410.5 Da PI: 9.6346

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
920531	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.6	5.5e-08	84	141	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +r +rk +NR +A+rsR +K++ +e + + +L+ eN++L ++l + ++++ ++e 920531 84 RRKKRKLSNRKSAQRSRIKKQKHLEDVRIELNKLKIENRELENRLRHVLYHCQREQME 141 799****************************************999998888876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.0E-7	78	131	No hit	No description
SMART	SM00338	2.4E-6	80	144	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	8.7E-6	82	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.967	82	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.03E-7	84	132	No hit	No description
CDD	cd14702	2.95E-13	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSTFSPVFSS EPVFANHVPA LETGFTPWDA SDLFSIFNSP VSPMEMNPGL EKTNPSQIQN 60 QSYSNPGLKD KPLDCTGSND VDERRKKRKL SNRKSAQRSR IKKQKHLEDV RIELNKLKIE 120 NRELENRLRH VLYHCQREQM ENDSLRLEHR VLHEKLLNLR QALVMRQIQQ SSTCATWSCI 180 NSTVVTVLQN PSII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	ERRKKRKL
2	83	104	RRKKRKLSNRKSAQRSRIKKQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	920531

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002862568.1	1e-143	basic leucine zipper 4
TrEMBL	D7MXA7	1e-142	D7MXA7_ARALL; Uncharacterized protein
STRING	scaffold_33400002.1	1e-142	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	1e-48	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	920531
Entrez Gene	9298643