PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

92497

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 213aa MW: 22295.8 Da PI: 4.1805

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
92497	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.3	2.7e-08	17	37	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++ G C+ G++C+F+H+ 92497 17 ACKFYLA-GACRNGASCRFSHD 37 5****.***********6 PP
2	zf-CCCH	27.3	6.2e-09	53	76	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e+C+f + G C +GdrCk+aHg 92497 53 RERCKFVDAPGGCTFGDRCKYAHG 76 89*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.234	12	39	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-4	13	38	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-7	14	37	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-6	17	37	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.2E-5	18	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.197	50	78	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.01	51	77	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-6	53	79	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-7	53	76	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-7	55	79	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
VFDVTARVTS RAMSATACKF YLAGACRNGA SCRFSHDADA SASASARAST ETRERCKFVD 60 APGGCTFGDR CKYAHGASDA GASDVARAFS RVTLATGAGR GMSASATAFA PGGTRGNANA 120 NGAEYEHGEE EDEDWGYVDE HGNWVSFDDE GEGAREFLAA QLPDEDELLG LTSEGPSGAG 180 DDAWGFFDEG GNWVSLEGEG QRYLQTQEDL VR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP000583	0.0	CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416752.1	1e-152	predicted protein, partial
TrEMBL	A4RUZ0	1e-150	A4RUZ0_OSTLU; Uncharacterized protein (Fragment)
STRING	ABO95045	1e-151	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1918	12	12

Link Out ? help Back to Top
Phytozome	92497