PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

92733

Common Name

SELMODRAFT_114491, SELMODRAFT_92733, WRKY_26, WRKY_7

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 126aa MW: 13285 Da PI: 8.2918

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
92733	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	6.2e-32	1	60	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ 92733 1 MNDGCQWRKYGQKMAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGSHNHP 60 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	5.23E-28	1	62	IPR003657	WRKY domain
SMART	SM00774	1.3E-38	1	61	IPR003657	WRKY domain
PROSITE profile	PS50811	29.367	1	62	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-31	2	62	IPR003657	WRKY domain
Pfam	PF03106	1.5E-28	2	60	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MNDGCQWRKY GQKMAKGNPC PRAYYRCTVA PGCPVRKQVQ RCADDMSILI TTYEGSHNHP 60 LPPAATAMAS TTSAAACMLL SGSTLSESVI NSSNGSPYMA DHHGHHLAAA GSSNPTICAS 120 SPFPTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-25	1	64	14	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002970009.2	2e-87	probable WRKY transcription factor 31
Refseq	XP_002981479.2	2e-87	probable WRKY transcription factor 31
Swissprot	Q9XEC3	4e-52	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	D8RFJ8	1e-88	D8RFJ8_SELML; Uncharacterized protein WRKY_26 (Fragment)
STRING	EFJ17667	2e-89	(Selaginella moellendorffii)
STRING	EFJ29133	2e-89	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	2e-39	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	92733
Entrez Gene	9645382 \| 9647450

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]