PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93081
Common NameSELMODRAFT_93081
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HSF
Protein Properties Length: 178aa    MW: 20503.1 Da    PI: 9.5426
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93081genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ + ++sw+ +gnsfvv+++ +f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++          eF+++ F++g+++ll++i+
         93081  27 FLTKTYDMIDDPDSDAIVSWTGKGNSFVVWNPLDFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------CEFANEGFRRGERHLLKNIH 114
                   9*****************************************************************99.........67****************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rkk 
         93081 115 RKKP 118
                   **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5923116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.34E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MILPSQQQNG QQLQPDAALS SAAPPPFLTK TYDMIDDPDS DAIVSWTGKG NSFVVWNPLD  60
FSRDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRCEFANE GFRRGERHLL KNIHRKKPTS  120
QGHSQHQPGQ STEVGKLGLE GEVDRLNRDK NVLMLELVRL RQQQQQTERE LQVMGQRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-292511618120Heat shock factor protein 1
5d5u_B8e-291311616129Heat shock factor protein 1
5d5v_B8e-291311616129Heat shock factor protein 1
5d5v_D8e-291311616129Heat shock factor protein 1
5hdg_A7e-29251168110Heat shock factor protein 1
5hdn_A7e-29251168110Heat shock factor protein 1
5hdn_B7e-29251168110Heat shock factor protein 1
5hdn_C7e-29251168110Heat shock factor protein 1
5hdn_D7e-29251168110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002970172.21e-128heat stress transcription factor A-1
SwissprotQ9LQM71e-77HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLD8RHL11e-129D8RHL1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ283021e-130(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-53heat shock factor 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  3. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]