PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 93911
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 250aa    MW: 27584.3 Da    PI: 8.548
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
93911genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.6e-106590227
             -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
             kt+lCr+f     C++GdrC FaHg+
    93911 65 KTRLCRNFESPQGCRFGDRCVFAHGE 90
             9***********************96 PP
2zf-CCCH32.61.4e-10203228126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +kt++C+ + r+G+C++G rC++aHg
    93911 203 FKTKICDSWVRNGQCPFGRRCHYAHG 228
              69***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.822634IPR000571Zinc finger, CCCH-type
SMARTSM003560.85833IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5933IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-51032IPR000571Zinc finger, CCCH-type
PfamPF1460821431No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-155994IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.846391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-96394IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-56390IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-86590IPR000571Zinc finger, CCCH-type
SMARTSM003229.2E-8111185IPR004087K Homology domain
PROSITE profilePS5008414.508114180IPR004088K Homology domain, type 1
SuperFamilySSF547911.2E-13117190IPR004088K Homology domain, type 1
PfamPF000133.7E-10119182IPR004088K Homology domain, type 1
CDDcd001051.82E-9119180No hitNo description
Gene3DG3DSA:3.30.1370.105.0E-14119190IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.1E-14201234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-10202233IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6202229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.45202230IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGPANANDEK LCAKFFSIHG CAYGADCHFL HTYRPGLPVP PRPAPLPYVY TMSDAMRPQV  60
NEKIKTRLCR NFESPQGCRF GDRCVFAHGE EELRTEEANT ASMGSTYMLQ TSIEQAVLVP  120
VPQVHVGAIV GKAGSAIAQV SATSGAKVSM LSAEYTNSDG NRLCRVIGSP LDVQRAQEMI  180
YQRLTYAERK KSDAPKDSKK KPFKTKICDS WVRNGQCPFG RRCHYAHGNE ELQQRHSTNE  240
NSENVVIVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005970.0CP000597.1 Ostreococcus lucimarinus CCE9901 chromosome 17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422182.10.0predicted protein
TrEMBLA4S9J60.0A4S9J6_OSTLU; Uncharacterized protein
STRINGABP004990.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1347533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-06C3H family protein