PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9540
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 97aa    MW: 11535.2 Da    PI: 10.4499
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9540genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.28.9e-14144448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT eEd l  ++v ++G+  W+ Ia+++  g+t kq+  rw++yl
             9540  1 WTHEEDALVRQLVDEHGPQKWAYIAERLV-GKTQKQVYARWRDYL 44
                     *****************************.*************97 PP
2Myb_DNA-binding26.61.4e-085292345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W + E++ lv   +  G+  W+  ar m+ gR+++ +k+r++
             9540 52 PWAEFEEKHLVFIQEAIGNQ-WAVLARLMP-GRSPNAIKNRFH 92
                     78889999999999****99.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.71E-23191IPR009057Homeodomain-like
PfamPF002497.6E-13144IPR001005SANT/Myb domain
CDDcd001671.81E-9144No hitNo description
Gene3DG3DSA:1.10.10.608.7E-19151IPR009057Homeodomain-like
SMARTSM007171.9E-6146IPR001005SANT/Myb domain
PROSITE profilePS5129424.2148IPR017930Myb domain
PROSITE profilePS512947.3764997IPR017930Myb domain
SMARTSM007170.0184997IPR001005SANT/Myb domain
PfamPF002498.6E-75192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-135294IPR009057Homeodomain-like
CDDcd001670.002627092No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
WTHEEDALVR QLVDEHGPQK WAYIAERLVG KTQKQVYARW RDYLQPGLTT RPWAEFEEKH  60
LVFIQEAIGN QWAVLARLMP GRSPNAIKNR FHATRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-231977103MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-2219761157MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-2219761157MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-231977103C-Myb DNA-Binding Domain
1msf_C5e-231977103C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005851e-162CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417704.14e-67predicted protein, partial
TrEMBLA4RX779e-66A4RX77_OSTLU; Uncharacterized protein (Fragment)
STRINGABO959972e-66(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-26myb domain protein 119