PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9737
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 95aa    MW: 10922.3 Da    PI: 5.6297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9737genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14548145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +WT+eEd  +++ +k +G   W+++ ++++ +Rt+ qc++rw 
             9737  5 KSSWTPEEDAFILRWIKDHGRIKWSLVQEHVP-TRTDVQCRERWT 48
                     578*****************99**********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.259155IPR017930Myb domain
SuperFamilySSF466896.37E-20265IPR009057Homeodomain-like
SMARTSM007174.2E-15453IPR001005SANT/Myb domain
CDDcd001671.81E-13751No hitNo description
Gene3DG3DSA:1.10.10.601.4E-23758IPR009057Homeodomain-like
PfamPF139219.5E-15868No hitNo description
SuperFamilySSF466891.89E-55295IPR009057Homeodomain-like
PROSITE profilePS512948.0955695IPR017930Myb domain
CDDcd001679.02E-45995No hitNo description
Gene3DG3DSA:1.10.10.601.1E-95995IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
PSLVKSSWTP EEDAFILRWI KDHGRIKWSL VQEHVPTRTD VQCRERWTGV LDPGIKTGPW  60
TEEEDAALMA AMGPHWQENG FNEWARLTAV LPGRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19195392B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005851e-115CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417725.16e-65predicted protein, partial
TrEMBLA4RXC41e-63A4RXC4_OSTLU; Uncharacterized protein (Fragment)
STRINGABO960182e-64(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-22myb domain protein 3r-5