PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9818
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 72aa    MW: 8348.46 Da    PI: 9.3851
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9818genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.37.7e-161036127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             yktelCr + ++G C+yG++C+FaHg+
     9818 10 YKTELCRSWEESGSCRYGAKCQFAHGR 36
             9************************96 PP
2zf-CCCH44.91.9e-144872125
             --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
             ykte Cr+fa+ G C+yG+rC+F+H
     9818 48 YKTEVCRTFAAQGNCPYGSRCRFIH 72
             9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-21542IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-12641IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69937IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-9936IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-131036IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-154372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-94472IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-54772IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2114772IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-114872IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
GSPKQQHSLY KTELCRSWEE SGSCRYGAKC QFAHGRDELR PVLRHPKYKT EVCRTFAAQG  60
NCPYGSRCRF IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A9e-30172172Tristetraproline
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005831e-117CP000583.1 Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001416952.14e-48predicted protein, partial
RefseqXP_022838502.12e-46Zinc finger, CCCH-type
SwissprotP174313e-27TISB_RAT; mRNA decay activator protein ZFP36L1
SwissprotP239503e-27TISB_MOUSE; mRNA decay activator protein ZFP36L1
TrEMBLA0A090LYN44e-45A0A090LYN4_OSTTA; Zinc finger, CCCH-type
TrEMBLA0A1Y5IA532e-45A0A1Y5IA53_OSTTA; CCCH-type Zn-finger protein
TrEMBLA4RUF91e-46A4RUF9_OSTLU; Uncharacterized protein (Fragment)
STRINGABO952452e-47(Ostreococcus 'lucimarinus')
STRINGA0A090LYN47e-46(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-28C3H family protein