PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

98217

Common Name

SELMODRAFT_98217

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C3H

Protein Properties

Length: 104aa MW: 12209.2 Da PI: 8.821

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
98217	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.8e-08	50	70	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff G+Ck G+rCkF+H 98217 50 PCKFFISLGFCKDGERCKFSH 70 8******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.441	1	18	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.18	4	15	No hit	No description
SuperFamily	SSF90229	5.1E-7	20	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.887	20	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.042	20	46	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	1.0E-4	26	44	No hit	No description
PROSITE profile	PS50103	14.098	45	73	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.66	48	72	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-11	49	99	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	50	70	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	50	70	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MKGRCSKGKS CTFSHEEVPD TKLYLCKYFL TRCCLKGDEC PFSHDTAKFP CKFFISLGFC 60 KDGERCKFSH ASVSKEEREK IIQRLEIEKK QKLEEKKQTL EEKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269\|PubMed:18582464}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024533414.1	2e-61	zinc finger CCCH domain-containing protein 15 homolog
Swissprot	Q9LTS7	3e-22	C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBL	D8RNV4	6e-67	D8RNV4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ25932	1e-67	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8161	12	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	4e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	98217
Entrez Gene	9636514

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]