PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

99850

Common Name

MICPUN_99850

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

E2F/DP

Protein Properties

Length: 1324aa MW: 135494 Da PI: 9.8326

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
99850	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	36.5	8e-12	857	900	23	71
E2F_TDP 23 givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 g+v +++ a++L v krRR+YD++NVLea+++ e+ +k + +w+g 99850 857 GNVAVDSLAERL---GV--KRRRLYDVMNVLEAVGVTERISKGACKWHG 900 778888889999...99..9***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.8E-17	814	901	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	2.4E-13	816	900	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	6.7E-12	817	900	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	2.48E-8	858	899	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1324 aa Download sequence Send to blast
MAGQPKPKPA GPASGRGARA AAPVVVEEDM SKLVPCPIIT AHPNGFVERT EPERETHEVR 60 AYKLGKKKRS YNQVELTFDR ATAGSWANAA EGAPNGDVLG IYEATERGFS LDVPENVRDS 120 ALEYELRLYN GTSVRALIYL VYAEPLSRGS ASSGSKSSKG LTANGSAALT DKNGNTWLPV 180 TRSRCAKGCQ GPILSAIQRF GKQGRTQKGA PGASAPDAAT ANDRDKWKDA RNLFISIDEA 240 SNHVQAFGPN KCKIFRLLFG IFSATSDEFL GSGVSGPIRV LANNDVPKGA ACLRIRSSLA 300 DTWSGWKNPV VLDADDVPVA PSEDAFARAN PMAARGAQVA PPTSYGAKRG SSYRIDVRSP 360 KRIRHPPHSQ HHSQPRGAEA FPRPPVELAQ FPHDLSHNAL ETFFKEAIGV QGGTPDGADK 420 NGFDASIFHT PLNELGASHL FANPRGASAL PITGQDLPPV CTPGGDSALK KMAAAADAGL 480 IPPPTVNNAG VGKFTPAQAA LLLNSGGAPN SLGSLGSLGS LGSAFKDAKS PRSVHAKTRS 540 VTGAARKMKE RAETDAERNA RAEDETAAVE AAAAAAASPV AVAPAVGYDP KSAAAAAGGG 600 SKNPTLSPHS WLLSVLGSGS RDGAMRTAIA NAVQQSEMKA ANPDAFLANA GGSPFTVARD 660 RGPNTVMNNN AATRTGAQSV ATHAQQTADA AAMPPPAIPT LAHTVGGGVV GGAQAAEDFA 720 LSRGALLGSP AGLAPTRLLF SPVTNAKDRA IRALADESDD EDGVAMGHAN PFTGTGVKAF 780 KSSKKGVKDS LPAEAWMSPS KSAAVAAANQ GPTYVRKDHS LASITDRIVA EFDEANVENN 840 VSAVQTEGGG STAQWAGNVA VDSLAERLGV KRRRLYDVMN VLEAVGVTER ISKGACKWHG 900 ATRVANVLGK LLEEAPAVIA AAEQEDANTS GDASSLKALA CRLMQHVGST PKHVPIAFDA 960 CVATMRLGGV PAPDAPGAHG TGALAGAARR LHDVASILIR IGVLEFVERE GKAKGRGELR 1020 WLGATSVTKR LAEGAAGAAV EKGYGTGAQQ AALERAAAAA AASQHKSVLG QVPLDKKWDA 1080 ANAQAAAANN ANAAKAASRL SSFFQRAGPG GAPAPVPIPA VNFGELDGRA SKKSRKGGQS 1140 VKFRQDVAGA NSLFSPPMHA PPVNPRDTAA AAAALLRSPE WIAGLAQAAS APSPAAPIGG 1200 AAVGGASWAS PAFVAPLQAL YSFYSGAIGP KTIGGDRRAS GASEGDLEGS VSLSGLSGLS 1260 PTLFGTSPAE VEATLHREVM QAAAQAAVQA AMAGVNPPDS VVREKMDGAR ATRAAATRET 1320 AGR*

Sequence ? help Back to Top

Protein Sequence Length: 1324 aa Download sequence Send to blast

MAGQPKPKPA GPASGRGARA AAPVVVEEDM SKLVPCPIIT AHPNGFVERT EPERETHEVR  60
AYKLGKKKRS YNQVELTFDR ATAGSWANAA EGAPNGDVLG IYEATERGFS LDVPENVRDS  120
ALEYELRLYN GTSVRALIYL VYAEPLSRGS ASSGSKSSKG LTANGSAALT DKNGNTWLPV  180
TRSRCAKGCQ GPILSAIQRF GKQGRTQKGA PGASAPDAAT ANDRDKWKDA RNLFISIDEA  240
SNHVQAFGPN KCKIFRLLFG IFSATSDEFL GSGVSGPIRV LANNDVPKGA ACLRIRSSLA  300
DTWSGWKNPV VLDADDVPVA PSEDAFARAN PMAARGAQVA PPTSYGAKRG SSYRIDVRSP  360
KRIRHPPHSQ HHSQPRGAEA FPRPPVELAQ FPHDLSHNAL ETFFKEAIGV QGGTPDGADK  420
NGFDASIFHT PLNELGASHL FANPRGASAL PITGQDLPPV CTPGGDSALK KMAAAADAGL  480
IPPPTVNNAG VGKFTPAQAA LLLNSGGAPN SLGSLGSLGS LGSAFKDAKS PRSVHAKTRS  540
VTGAARKMKE RAETDAERNA RAEDETAAVE AAAAAAASPV AVAPAVGYDP KSAAAAAGGG  600
SKNPTLSPHS WLLSVLGSGS RDGAMRTAIA NAVQQSEMKA ANPDAFLANA GGSPFTVARD  660
RGPNTVMNNN AATRTGAQSV ATHAQQTADA AAMPPPAIPT LAHTVGGGVV GGAQAAEDFA  720
LSRGALLGSP AGLAPTRLLF SPVTNAKDRA IRALADESDD EDGVAMGHAN PFTGTGVKAF  780
KSSKKGVKDS LPAEAWMSPS KSAAVAAANQ GPTYVRKDHS LASITDRIVA EFDEANVENN  840
VSAVQTEGGG STAQWAGNVA VDSLAERLGV KRRRLYDVMN VLEAVGVTER ISKGACKWHG  900
ATRVANVLGK LLEEAPAVIA AAEQEDANTS GDASSLKALA CRLMQHVGST PKHVPIAFDA  960
CVATMRLGGV PAPDAPGAHG TGALAGAARR LHDVASILIR IGVLEFVERE GKAKGRGELR  1020
WLGATSVTKR LAEGAAGAAV EKGYGTGAQQ AALERAAAAA AASQHKSVLG QVPLDKKWDA  1080
ANAQAAAANN ANAAKAASRL SSFFQRAGPG GAPAPVPIPA VNFGELDGRA SKKSRKGGQS  1140
VKFRQDVAGA NSLFSPPMHA PPVNPRDTAA AAAALLRSPE WIAGLAQAAS APSPAAPIGG  1200
AAVGGASWAS PAFVAPLQAL YSFYSGAIGP KTIGGDRRAS GASEGDLEGS VSLSGLSGLS  1260
PTLFGTSPAE VEATLHREVM QAAAQAAVQA AMAGVNPPDS VVREKMDGAR ATRAAATRET  1320
AGR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	870	874	KRRRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501599.1	0.0	predicted protein
TrEMBL	C1E5A5	0.0	C1E5A5_MICCC; Uncharacterized protein
STRING	XP_002501599.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4094	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	2e-09	DP-E2F-like 1

Link Out ? help Back to Top
Phytozome	99850
Entrez Gene	8242510

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]