PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA102G00007

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 238aa MW: 26730.2 Da PI: 10.1605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA102G00007	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.6	9e-35	15	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sg 81 lp+G++F+Ptd+e++ e+L+ kv++++ + +++i+++d i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + AA102G00007 15 LPAGVKFDPTDQEVM-EHLEGKVRDDPrkrhplI--DDFIRTIDgqngICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKVHtdsevgsET 108 799********99.99***997775431..233544444445******.666777899**************733345555578 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vls +g+ +g kk+Lv+y g+++k+ekt+Wvmh+y+l AA102G00007 109 RWHKTGKTRPVLS-NGRIKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 156 8********.999*******6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-38	10	175	IPR003441	NAC domain
PROSITE profile	PS51005	33.262	15	175	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	16	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLQTLSGGIH ELPGLPAGVK FDPTDQEVME HLEGKVRDDP RKRHPLIDDF IRTIDGQNGI 60 CYTHPEKLPG VSKDGTVRHF FHRPSKAYTT GTRKRRKVHT DSEVGSETRW HKTGKTRPVL 120 SNGRIKGYKK ILVLYTNYGK QKKPEKTNWV MHQYHLGNNE EEKEGEIVIS KVFYQTQPRQ 180 CGGGSAAITT GKTHRHLHHY HHLHNVSGGG TAGAGEFFNN IPAIISFNPT GVSTPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA102G00007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	2e-37	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129565.1	1e-137	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	1e-129	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	M4D3I0	1e-136	M4D3I0_BRARP; Uncharacterized protein
STRING	Bra011034.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-132	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]