PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00069
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 365aa    MW: 41004.8 Da    PI: 6.1107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00069genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.5e-08127147526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C++f++ G Ck Gd+C FaHg
  AA102G00069 127 ACPDFRK-GGCKKGDSCEFAHG 147
                  7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5122148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235123149IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6127147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5127149IPR000571Zinc finger, CCCH-type
SMARTSM003560.88157180IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202157181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MMIGETRRAY PTVEIPPWPT SEDLTASEIF SPALGSPDYN MLEALSALQR YLPSNEPDPD  60
SDPDLLNPDG PDSPIDAYSC DHFRMYEFKV RRCARGRSHD WTECPYAHPG EKARRRDPRK  120
FHYSGTACPD FRKGGCKKGD SCEFAHGVFE CWLHPARYRT QPCKDGGNCR RRVCFFAHAP  180
DQLRFLPNRS PDRVDSFDVT SPIRHSCPRA FQLSISPVSA SPPMSPRADS ESSTQSLTRC  240
SINDVVTSFK NLQFNNVKSF PPSYNSQLRC YQTGFGSGFG SGSPRGSLLG PGFQSLPTTP  300
TRPDIWDNGL DEDPEMVERV ESGRELRAKM FEKLSKENCM DRVDPDPIQN LGESPDVGWV  360
SDLLM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004490.10.0zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4P4C30.0V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_006412868.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]