PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00073
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 283aa    MW: 31033 Da    PI: 7.8586
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00073genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.91.2e-1645578128
          NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  t + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  AA102G00073   4 TGETRWHKTGKTRPVMV-NGQQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 55 
                  67889************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.659174IPR003441NAC domain
SuperFamilySSF1019417.85E-19474IPR003441NAC domain
PfamPF023654.0E-6655IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
GNSTGETRWH KTGKTRPVMV NGQQKGCKKI LVLYTNFGKN RKPEKTNWVM HQYHLGTHEE  60
EKEGELVVSK IFYQTQPRQC NWSSSSNLSV LSGGNGGGGE GSSGGGGGEQ YCGTNTSGGG  120
SCSSSREIVN VNPTTVRSMN RNDDVASGGI MAVAAAAAAV AAGLPSYTMD QLSFVPFMKN  180
FDEVTRRETP TGQATCDDVM DQHHRHHHHA SSSTSHHVAH NHQQHHAFNI SQPTHPISTI  240
ISPSNSLHHA SINILDDNPY HHHHQHQHQH QNVHRILLPN ENY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00073
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137840.11e-123PREDICTED: uncharacterized protein LOC103861883 isoform X1
RefseqXP_009137841.11e-123PREDICTED: uncharacterized protein LOC103861883 isoform X2
SwissprotQ9M0F81e-109NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A078GYJ31e-127A0A078GYJ3_BRANA; BnaA03g49460D protein
STRINGBra024152.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66352643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.13e-98NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]