PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00134
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 235aa    MW: 26975.4 Da    PI: 5.0094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00134genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1160102754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    Er+RR+++N++++ Lr+++P+ +      Kl+Ka++ +  ++Y+++L
  AA102G00134  60 LSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSINYMQQL 102
                  57*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.67553102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-1056102No hitNo description
SuperFamilySSF474591.24E-1657129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-1659124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1259108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-960102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEDLDFDYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS GSPEGAATAS SSPANSKNVL  60
SERNRRQKLN QRLFALRSVV PNISKLDKAS VIKDSINYMQ QLIDEEKKLE AEIKELESQT  120
QMLSQLNQNC DYDCVNNFNS LDHQQQNILK SKKIKQINYN DTFESSVARM HNSPIEVVEM  180
KVTWMGEKTG VICITCKKKR ETMLQLCRVL ESLNLNILTT NFTSLSSHLS STLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-1358121972Transcription factor MYC2
5gnj_B8e-1358121972Transcription factor MYC2
5gnj_E8e-1358121972Transcription factor MYC2
5gnj_F8e-1358121972Transcription factor MYC2
5gnj_G8e-1358121972Transcription factor MYC2
5gnj_I8e-1358121972Transcription factor MYC2
5gnj_M8e-1358121972Transcription factor MYC2
5gnj_N8e-1358121972Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00134
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412786.21e-120transcription factor bHLH27
SwissprotQ700E31e-115BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A1J3EJ611e-119A0A1J3EJ61_NOCCA; Transcription factor bHLH27 (Fragment)
TrEMBLA0A1J3GQB31e-119A0A1J3GQB3_NOCCA; Transcription factor bHLH27 (Fragment)
STRINGXP_006412786.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-95bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]