PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00279
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 291aa    MW: 33461.8 Da    PI: 4.2272
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00279genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.41.8e-131998281
     trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
                 Wt +e l L++    +e + +++ +  ++W  +s+++ +  ++rs +qC+ kw+ l  +y +ike+e++++ + +s +++
  AA102G00279 19 WTVKECLILVNEIAVVEADCSNTLSSFQKWTMISENCNALDVHRSLNQCRRKWDALVSDYTQIKEWESQEQGDGRSYWSL 98
                 *********************************************************************98888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-101895No hitNo description
PROSITE profilePS500906.5041975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEEGTSGSWR TRSQVAPDWT VKECLILVNE IAVVEADCSN TLSSFQKWTM ISENCNALDV  60
HRSLNQCRRK WDALVSDYTQ IKEWESQEQG DGRSYWSLSS ENRNKLKLPE GVDNELFEAI  120
NAVVMIQQEK AETEPDSDPE AQDEGPDILD ITAELGSKRS RHGGMISKEN PQQSWTNRIQ  180
ENTKEQEPAK ATHQNITMED KKNTMESSTD EEEEEEEDMI NIEEEVKAME EKLGEKAELI  240
HAIVARNHLP NESETEKKMK YVREQGDELI DCLTEIVNTL HRLREVSEDF Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412613.11e-130trihelix transcription factor ASR3
RefseqXP_024005449.11e-130trihelix transcription factor ASR3
RefseqXP_024005450.11e-130trihelix transcription factor ASR3
RefseqXP_024005452.11e-130trihelix transcription factor ASR3
RefseqXP_024005453.11e-130trihelix transcription factor ASR3
TrEMBLV4P3R91e-129V4P3R9_EUTSA; Uncharacterized protein
STRINGXP_006412613.11e-130(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-114sequence-specific DNA binding transcription factors