PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA105G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 135aa    MW: 15621.3 Da    PI: 4.5496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA105G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-081358346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W++eE +++ +a + +  +   +W+++a++++ g++  +++  + k
      AA105G00001 13 TWSKEENKKFEKALAIYADDtpdRWSKVAEMIP-GKSISDVIIQYTK 58
                     7*****************99*************.***9999877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-4951IPR009057Homeodomain-like
SMARTSM007176.8E-81062IPR001005SANT/Myb domain
SuperFamilySSF466895.91E-111266IPR009057Homeodomain-like
PfamPF002491.0E-71358IPR001005SANT/Myb domain
CDDcd001675.20E-71359No hitNo description
PROSITE profilePS500906.2261460IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
METTLHQFVI QETWSKEENK KFEKALAIYA DDTPDRWSKV AEMIPGKSIS DVIIQYTKLE  60
EDLFDIDAGL VPIPGYSASA NSNSSPFVEF DHNLQTCSCD DHEFDVFRKR SNGVRGFEQE  120
RKKGVPWTEE EHRYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1514821179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA105G00001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445577.16e-55PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-32DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A087G5565e-51A0A087G556_ARAAL; Uncharacterized protein
STRINGA0A087G5568e-52(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-53MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]