PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA105G00029
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 204aa    MW: 22869.4 Da    PI: 6.6221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA105G00029genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-055981123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ Cg+ F++   L  H+++H
  AA105G00029 59 YSCSFCGREFKSAQALGGHMNVH 81
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-75686No hitNo description
Gene3DG3DSA:3.30.160.602.0E-45783IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.9E-65982IPR007087Zinc finger, C2H2
SMARTSM003550.00175981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1545986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MERSGQYLMS MKFRPMSKSS SNTSLFWPFG AALQVRDQTM LEDQCGGGSG CITWPPRSYS  60
CSFCGREFKS AQALGGHMNV HRRDRALLKQ YSLSSSSSTT DDNHHQNHQN HINSPQEDSR  120
KAKTGVKRDL NDVNHDDDND DDDENVLELS VGLNSEFVSR KRVKRDVSRL PMMVGLVLGV  180
SKINGCDEEL DLELRLGVDS TKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135481229superman protein
2l1o_A1e-135481229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA105G00029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491152.19e-62PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS93e-59RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLD7LZ359e-59D7LZ35_ARALL; Uncharacterized protein
STRINGXP_010491152.14e-61(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-44C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]