PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA107G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 245aa    MW: 27328.9 Da    PI: 8.3998
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA107G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1790144256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q   Le+ F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  AA107G00002  90 RKKLRLSKNQSAFLEDSFKEHTTLNPKQKIALAKELNLRPRQVEVWFQNRRARTK 144
                  778899***********************************************98 PP
2HD-ZIP_I/II125.62.2e-4090180192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk+q+++LE+sF+e+++L+p++K +la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+L +++++l+een+rL+kev+eLr +lk
  AA107G00002  90 RKKLRLSKNQSAFLEDSFKEHTTLNPKQKIALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLNKCCESLTEENRRLQKEVKELR-ALK 180
                  69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.50386146IPR001356Homeobox domain
SMARTSM003891.5E-1488150IPR001356Homeobox domain
SuperFamilySSF466891.17E-1789155IPR009057Homeodomain-like
PfamPF000465.4E-1590144IPR001356Homeobox domain
CDDcd000861.20E-1490147No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1790144IPR009057Homeodomain-like
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PfamPF021832.9E-10146180IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.5E-23146189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MELTLSLGDN GKKPIKIINQ ITSHKDLALC IANDSDTFTG GEEEDAVASM SISPPGSETS  60
SFRLEFGVKR YRRNKKDEEE EDCNENGFTR KKLRLSKNQS AFLEDSFKEH TTLNPKQKIA  120
LAKELNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLNKCCE SLTEENRRLQ KEVKELRALK  180
TLNPFCMQLP ATTLTMCPSC ERVATSSVPP SSSSASSLAT AASHNLGLST SSLHSPALTQ  240
AKQAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894TRKKLRL
2138146RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA107G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606550.13e-99PREDICTED: homeobox-leucine zipper protein HAT14
RefseqXP_013670853.13e-99homeobox-leucine zipper protein HAT14-like
SwissprotP466655e-95HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0D3EH957e-98A0A0D3EH95_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC336e-98A0A3N6QC33_BRACR; Uncharacterized protein
TrEMBLA0A3P6EL428e-98A0A3P6EL42_BRAOL; Uncharacterized protein
STRINGBo9g175900.11e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-82homeobox from Arabidopsis thaliana