PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA1098G00001

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

CAMTA

Protein Properties

Length: 970aa MW: 109227 Da PI: 5.8677

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA1098G00001	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.1	1.9e-54	13	129	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++e ++rwlk+ e++ iL+n+e+++l ++++++p+sgsl+L+n++++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyYah+e+nptfqrr AA1098G00001 13 YQEaHNRWLKPPEVYFILQNHERYQLNHKTPQNPTSGSLLLFNKRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGTVEALNCYYAHGEHNPTFQRR 109 566699***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+L+ ++e+ivlvhy++v AA1098G00001 110 IYWMLDPAYEHIVLVHYRDV 129 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.637	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.8E-75	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-46	15	129	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.7E-9	401	492	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.71E-17	407	491	IPR014756	Immunoglobulin E-set
CDD	cd00102	1.29E-4	407	492	No hit	No description
Pfam	PF01833	6.0E-8	408	490	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	4.6E-16	602	698	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.33E-16	603	699	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.733	604	696	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.09E-15	609	696	No hit	No description
Pfam	PF12796	1.6E-7	610	697	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.526	637	669	IPR002110	Ankyrin repeat
SMART	SM00248	0.018	637	666	IPR002110	Ankyrin repeat
SMART	SM00248	1800	676	705	IPR002110	Ankyrin repeat
SMART	SM00015	59	750	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	751	779	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.25E-9	751	859	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.39	807	829	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	808	837	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0038	809	828	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.3E-4	830	852	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.993	831	855	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-5	833	852	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MQSVPEFDIN TLYQEAHNRW LKPPEVYFIL QNHERYQLNH KTPQNPTSGS LLLFNKRVLK 60 FFRKDGHQWR RKKDGRAIAE AHERLKVGTV EALNCYYAHG EHNPTFQRRI YWMLDPAYEH 120 IVLVHYRDVS EGKEGKLSSG KALQFSPNAS ILFSSPSSID TQNTNYNLYT SDVIDRHQLS 180 SSSPATAETN SEVVYKTTGV ETPGDSTTSS SEFEVRKALK RLEEQLSIGD DTVATLDELY 240 IQEESLDNLQ VLECSKEINH FNQPVMTVHH RSENNKLERC YGGYVGTQYH SNNLMLEKND 300 SGGKGVRGEQ ESGSWKDVLE ACEAPRVLNF ECGSTANSSK GLQQNSNWSY SSQIDQSTLL 360 LPQDLASFEV PACYSALEDH KNNGEYCRMM DEEDNIDLPL EQTKKFTILD LAPEWGYSDE 420 TTKVIIVGSF LCDPRQSTWS CMFGDTEVPF EIIKEGVLRC EAPPHRPGKV TLSITSGDRV 480 SCSEVITFEY RDKAMTCFPR SILPQTCDIS TSPDELLLLV KFVQSLLVDP LSDSKNNTKQ 540 DTDKLLKKLK ADDDQWIEAI FDAEAASSTT VNWLLQELLK DKLDVWLSSR SKDKDQVFCS 600 LSKQEQGIIH MAAGLGFEWA LYPILDHGVS VDFRDITGRS ALHWAARFGR EKMVAALIAC 660 GASAGAVTDP TSQDSDGKTA ASIAASNGHK GLAGYLSEVA LTNHLSSLTL EETKISIDSA 720 QVQAEITVSS MSEPSLPCNE DEISLAAVRN AAQAAARIQA AFRAHSFRKR KQREAAMDSC 780 FKEYGIYCRD IEGMTAISKL VSRNSRNYHS AALSIQKKYR GYKDRKDFLS LREKVVKIQA 840 HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRQ DVEATEDSED DDILKVFRKK 900 KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTETLGEEE DEDGLFDIAD 960 MENDDLFSLP

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MQSVPEFDIN TLYQEAHNRW LKPPEVYFIL QNHERYQLNH KTPQNPTSGS LLLFNKRVLK  60
FFRKDGHQWR RKKDGRAIAE AHERLKVGTV EALNCYYAHG EHNPTFQRRI YWMLDPAYEH  120
IVLVHYRDVS EGKEGKLSSG KALQFSPNAS ILFSSPSSID TQNTNYNLYT SDVIDRHQLS  180
SSSPATAETN SEVVYKTTGV ETPGDSTTSS SEFEVRKALK RLEEQLSIGD DTVATLDELY  240
IQEESLDNLQ VLECSKEINH FNQPVMTVHH RSENNKLERC YGGYVGTQYH SNNLMLEKND  300
SGGKGVRGEQ ESGSWKDVLE ACEAPRVLNF ECGSTANSSK GLQQNSNWSY SSQIDQSTLL  360
LPQDLASFEV PACYSALEDH KNNGEYCRMM DEEDNIDLPL EQTKKFTILD LAPEWGYSDE  420
TTKVIIVGSF LCDPRQSTWS CMFGDTEVPF EIIKEGVLRC EAPPHRPGKV TLSITSGDRV  480
SCSEVITFEY RDKAMTCFPR SILPQTCDIS TSPDELLLLV KFVQSLLVDP LSDSKNNTKQ  540
DTDKLLKKLK ADDDQWIEAI FDAEAASSTT VNWLLQELLK DKLDVWLSSR SKDKDQVFCS  600
LSKQEQGIIH MAAGLGFEWA LYPILDHGVS VDFRDITGRS ALHWAARFGR EKMVAALIAC  660
GASAGAVTDP TSQDSDGKTA ASIAASNGHK GLAGYLSEVA LTNHLSSLTL EETKISIDSA  720
QVQAEITVSS MSEPSLPCNE DEISLAAVRN AAQAAARIQA AFRAHSFRKR KQREAAMDSC  780
FKEYGIYCRD IEGMTAISKL VSRNSRNYHS AALSIQKKYR GYKDRKDFLS LREKVVKIQA  840
HVRGYQVRKH YKVICWAVGI LDKVVLRWRR KGAGLRGFRQ DVEATEDSED DDILKVFRKK  900
KVDGAVNEAF SRVLSMANSP EARQQYHRVL KRYCQTKAEL GKTETLGEEE DEDGLFDIAD  960
MENDDLFSLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA1098G00001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020890717.1	0.0	calmodulin-binding transcription activator 4 isoform X1
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A087HG81	0.0	A0A087HG81_ARAAL; Uncharacterized protein
STRING	A0A087HG81	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]