PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00036
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27473.1 Da    PI: 5.0927
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00036genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.77.1e-141251442
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE.EEEEE-T CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaev.aviifss 42
                 n+  r  tf kR++g++KK eELS+LC ++v a +i s+
  AA10G00036 12 TNDASRRLTFNKRKKGLFKKMEELSILCRVNVgAAVISSP 51
                68999**************************943444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-13162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.442150IPR002100Transcription factor, MADS-box
CDDcd002665.07E-20287No hitNo description
PRINTSPR004041.4E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-19396IPR002100Transcription factor, MADS-box
PfamPF003195.8E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTKKKLTLAY VTNDASRRLT FNKRKKGLFK KMEELSILCR VNVGAAVISS PTNQTPPEMY  60
PSESEMKKIV EKFEMFTDTD PRKKVMSQKD FLRETLFKLR KQNSRLAEDI KELSMKEMLF  120
QCLEGNQEVV SCMNNSDLSE FIKFVGQYLQ ALNVRASVLR NPNLEQGESS ADPASFQVNS  180
PENIPELTKD LEALWCVERF REVNGVVSSS QVVLDLNQNP NEEKESSSTG YVGDSGSNSG  240
DSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-38M-type_MADS family protein