PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00129
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GeBP
Protein Properties Length: 462aa    MW: 50531.2 Da    PI: 5.4289
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00129genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573116.21.9e-36132230298
      DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 lfqrlw++eDei lL+G++++ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +fe+s+kiW++
  AA10G00129 132 LFQRLWTDEDEIELLRGFLEYmTMHRGGSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSTHDQATFEISRKIWNQ 230
                 79*******************788999999988****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-33133229IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEED GGGGVGDGGE SDSDDDLRDT DDVVLPGVNE VEDDDHEEGD  60
LNSPSTSSLA MVSTTAVVSG TMMSSSSGAV TVALPAGSAV PVSVIPVESD PKWHRMTEIV  120
HQRPTIDDSR RLFQRLWTDE DEIELLRGFL EYMTMHRGGS SHPPDTAPFY EQIKSKLQLD  180
FNKNQLVEKL RRLKKKYRNV MSKISSGKEV FFKSTHDQAT FEISRKIWNQ TGKIIGFEDN  240
NVLDFDETNN HHQHHHHHHH VNNTNGNSTF NSPFANPSME IEPENGVEKK LTMSSSSGSR  300
KRSRSRIGKI EEDNKPFTPS DGQHPNVASN VNLNETAAPG VGGLGGVGNL GVLIEETVKN  360
CVSPMVKEMM NGTTAMMMAA MGGFPGGGAH ALGTLSPMFT RPLNNMGIVG GGNRTMADER  420
WRKQQILELE VYSRRLELVQ EQIRVTLHEL KTMPSGGGGG GG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00129
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGCagra.2179s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-167DNA-binding storekeeper protein-related transcriptional regulator