PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00172

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB_related

Protein Properties

Length: 295aa MW: 33158.3 Da PI: 7.7486

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00172	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1.1e-07	2	26	3	27
SS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktI 27 WT +E+ l+ av+q+ +++W++I AA10G00172 2 VWTRDEESALIAAVTQYKKRNWRKI 26 6***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.8	1	56	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-7	2	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-7	3	53	IPR009057	Homeodomain-like
SMART	SM01349	5.1E-6	68	292	No hit	No description
Gene3D	G3DSA:1.25.10.10	5.2E-11	114	255	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	4.4E-11	118	250	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVWTRDEESA LIAAVTQYKK RNWRKIIEDP KFSRVLGRHS TRSLSAKWTH MVKTNKIVDI 60 GPNGEAPAYT VDILTTMNDS GLLKKLWDSR HVEYVAVDLA ELAATKHIKP GEIFQKFLMT 120 HANPVVVVKA IEAIGNLASD LKTHFKSHSL SMLPYLLKNL ELEEPTVTEA VTKTLEIIYE 180 AGSLDLGGYI KHRVKEAMKN KVPRVRSLTL NWVTFCLKMS NKDSILKYYE EYFHLCIERL 240 DDETQEVRVA EAVNLAAEVS AATATVLEVE AVARKAVAFA PFAEESAKKS EAALD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00172

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143640.1	2e-42	PREDICTED: protein MOR1-like isoform X1
Refseq	XP_009143641.1	2e-42	PREDICTED: protein MOR1-like isoform X2
Refseq	XP_013635950.1	2e-42	PREDICTED: protein MOR1-like isoform X2
Refseq	XP_013679403.1	2e-43	protein MOR1-like
Refseq	XP_013691853.1	2e-42	protein MOR1-like isoform X1
Refseq	XP_013691854.1	2e-42	protein MOR1-like isoform X2
Refseq	XP_022574943.1	2e-42	protein MOR1-like isoform X1
Refseq	XP_022574944.1	2e-42	protein MOR1-like isoform X2
TrEMBL	A0A078H2R8	2e-41	A0A078H2R8_BRANA; BnaA05g08380D protein
TrEMBL	A0A397Z8P6	1e-42	A0A397Z8P6_BRACM; Uncharacterized protein (Fragment)
TrEMBL	A0A3P5YR59	2e-41	A0A3P5YR59_BRACM; Uncharacterized protein
TrEMBL	M4CM81	2e-41	M4CM81_BRARP; Uncharacterized protein
STRING	Bra005318.1-P	3e-42	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-07	telomere repeat binding factor 1