PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00196
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 642aa    MW: 73607.3 Da    PI: 7.8849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00196genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.2e-51101431128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrFhPtdeel+ +yL+kkv+++ l+l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++  + 
  AA10G00196  10 LPPGFRFHPTDEELILHYLRKKVSSSLLPL-SIIADVDIYKFDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIATSanN- 106
                 79****************************.89***************988899***************************************98650. PP

         NAM  98 el.......vglkktLvfykgrapkgektdWvmheyrl 128
                  +       +g+kk Lvfykg+ pkg+kt+W+mheyrl
  AA10G00196 107 -NnggfnenIGVKKALVFYKGKPPKGVKTNWIMHEYRL 143
                 .33455556***************************98 PP
2NAM1721.8e-533394651128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee+ ++yLk+kv + ++++  +i e+d++k ePwdLpkk+k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ k+ l
  AA10G00196 339 LPPGFRFHPTDEEIATHYLKEKVLNPQFTA-AAIGEADLNKNEPWDLPKKAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKTCL 436
                 79*************************999.78***************99999*****************************************99999 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kktLvfykgrapkgekt+Wvmhe+rl
  AA10G00196 437 VGMKKTLVFYKGRAPKGEKTNWVMHEFRL 465
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-608183IPR003441NAC domain
PROSITE profilePS5100559.87310183IPR003441NAC domain
PfamPF023659.4E-2811143IPR003441NAC domain
SuperFamilySSF1019412.75E-60336491IPR003441NAC domain
PROSITE profilePS5100557.352339490IPR003441NAC domain
PfamPF023654.7E-27340465IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSLLPLS IIADVDIYKF DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI ATSANNNNGG FNENIGVKKA  120
LVFYKGKPPK GVKTNWIMHE YRLSDSLSPK RHRSNITTNS NNFKSKDYSM RLDDWVLCRI  180
YKKSNASLST PVIAADQEHE EIDQESSILP NLAIDRSLKQ QKSCSFSNLL DAADLTFLTD  240
IFNENNQEIT RNESDFSLML GNFSNYQEDQ FLDQKLPQLS SIPMEKTVIG SKRERLDFDD  300
ETTTNPWKKM MMRVERKLIM MVEEGGVVVN QGSEEVIKLP PGFRFHPTDE EIATHYLKEK  360
VLNPQFTAAA IGEADLNKNE PWDLPKKAKM GEKEFYFFCQ RDRKYPTGMR TNRATVSGYW  420
KATGKDKEIF RGKTCLVGMK KTLVFYKGRA PKGEKTNWVM HEFRLDGKYS YHNLPKSARD  480
EWVVCRVFHK NSPIAPPTQN QVMMRRQPTM EDFSRLDSFE NIDHLLDFSS LPPLMDQPGP  540
SFSNDQHDFK PINPSYFPNQ TFNFPYQTGP MFPREISNKG MVKLEHSFVS VSQDTGLSSD  600
VNTIATPEIS SYQGRTGVAN PAMIDGSKCT YDDLDDLEIL WD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-68949215169NO APICAL MERISTEM PROTEIN
1ut4_B9e-68949215169NO APICAL MERISTEM PROTEIN
1ut7_A9e-68949215169NO APICAL MERISTEM PROTEIN
1ut7_B9e-68949215169NO APICAL MERISTEM PROTEIN
4dul_A9e-68949215169NAC domain-containing protein 19
4dul_B9e-68949215169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518044.11e-164PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ61e-164NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A1J3CDP61e-162A0A1J3CDP6_NOCCA; Uncharacterized protein
TrEMBLA0A1J3GPP11e-162A0A1J3GPP1_NOCCA; Uncharacterized protein (Fragment)
STRINGXP_010518044.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.11e-166NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]