PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00376
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28580.5 Da    PI: 8.5488
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00376genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  AA10G00376  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box86.94e-2978174499
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK.nellleqieelqkkekelqeenkaLrkkle 99 
                  + +++ +++ e+ ++e+ kLk ++enLqr+qR+llGedL++L+ keL+qLe+qL+ slk++R  K ++++l+q+++lq ke++l e+n+aL++kl+
  AA10G00376  78 IEVNNKPAKELENNYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKvTQYMLDQLSDLQGKENMLLEANRALSMKLD 174
                 56667788999****************************************************97758**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002657.62E-46277No hitNo description
SuperFamilySSF554556.28E-34281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2385173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.61488179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SNMLKTLERY QKCSYGSIEV NNKPAKELEN NYREYLKLKG RYENLQRQQR NLLGEDLGPL  120
NSKELEQLER QLDGSLKQVR CIKVTQYMLD QLSDLQGKEN MLLEANRALS MKLDDMIGVR  180
NHHIGWESND QQNVAYGHQA QSQGLFQSLE CDPTLQIGYN HPVCSEQMAV TTQGQNQQAN  240
GYIPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-31751751103Developmental protein SEPALLATA 3
4ox0_B2e-31751751103Developmental protein SEPALLATA 3
4ox0_C2e-31751751103Developmental protein SEPALLATA 3
4ox0_D2e-31751751103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHAGL4A0.0M55552.1 Arabidopsis thaliana transcription factor (AGL4) mRNA, complete cds.
GenBankBT0204780.0BT020478.1 Arabidopsis thaliana At3g02310 gene, complete cds.
GenBankKC9679590.0KC967959.1 Brassica oleracea var. viridis SEP2.b (SEP2.b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408426.11e-168developmental protein SEPALLATA 2 isoform X1
SwissprotP293841e-168SEP2_ARATH; Developmental protein SEPALLATA 2
TrEMBLA0A1J3CL621e-168A0A1J3CL62_NOCCA; Developmental protein SEPALLATA 2
STRINGXP_006408426.11e-167(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32892765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-170MIKC_MADS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]
  3. Wang X, et al.
    An exon skipping in a SEPALLATA-Like gene is associated with perturbed floral and fruits development in cucumber.
    J Integr Plant Biol, 2016. 58(9): p. 766-71
    [PMID:26936301]
  4. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]