PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00391
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TCP
Protein Properties Length: 313aa    MW: 34937.2 Da    PI: 6.9742
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00391genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.83.3e-3376186289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg......... 88 
                  g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl+ ak +i+el+ ++ s+++++   + ++++ + +++  +         
  AA10G00391  76 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLNVAKDEIDELPPLPISPEHFSllhN-HNHHHQPGQD--Ptqfgfkint 171
                 689*************************************************************999998886532.2222222222..1234555543 PP

         TCP  89 ..............k 89 
                               +
  AA10G00391 172 sveesqenkerrenD 186
                 333333322222220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2878182IPR005333Transcription factor, TCP
PROSITE profilePS5136931.24478136IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMNIAAWKDA NDDVSAKETT TTTRLEQDKE EAVIVTTATT NGKTVNKKPL SNPSSSSSSA  60
WMRSKDPRIV RVSRAFGGKD RHSKVCTLRG LRDRRVRLSV PTAIQLYDLQ ERLGVDQPSK  120
AVDWLLNVAK DEIDELPPLP ISPEHFSLLH NHNHHHQPGQ DPTQFGFKIN TSVEESQENK  180
ERRENDIVLS NNGDYNSYNL DQHHQNSSFQ TDYHHHHHLV PFPTTIQSLF PSSSSSRTDG  240
SRNHFEMPLM GNNNSSSSNN ISSLYSLLHG SGNSGNSNSR MFSSSVEFNG GNTMSRFVGS  300
DSSTSRGSDD QQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1983137155Putative transcription factor PCF6
5zkt_B3e-1983137155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886906.11e-113transcription factor TCP13
RefseqXP_020886907.11e-113transcription factor TCP13
SwissprotQ9S7W51e-111TCP13_ARATH; Transcription factor TCP13
TrEMBLD7LAL31e-112D7LAL3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__146__AT3G02150.21e-113(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-89plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]