PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA114G00014
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 149aa    MW: 17614.4 Da    PI: 9.978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA114G00014genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.8e-1136133383
                  EE-..-HHHHT.T-EE--HHH.HTT................---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
           B3   3 kvltpsdvlks.grlvlpkkfaeeh................ggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                  k+lt+sdv k  grl +p + + e                   +k+ ++ +++ d++g    sW++ l  r++   yvl +GW++ v+ n+ +e+D++
  AA114G00014  36 KTLTKSDVKKVeGRLLIPFSQLIEQnfftpeelttmeedeyR-SKKIGVPIRVIDQRGpipVSWNLSL--RRRNLNYVLVSGWNQIVERNRFEENDSI 130
                  889999999977999999888655569999988888777742.34488899*****************..999999*********************9 PP

                  EEE CS
           B3  81 vFk 83 
                  ++ 
  AA114G00014 131 TIW 133
                  975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.7E-3013120IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.102.6E-1724148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1531146IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1035145No hitNo description
PROSITE profilePS5086310.23654149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MYRTMNGFLL PKDTPQWLIS RMRYMEGSEP KKIAKKTLTK SDVKKVEGRL LIPFSQLIEQ  60
NFFTPEELTT MEEDEYRSKK IGVPIRVIDQ RGPIPVSWNL SLRRRNLNYV LVSGWNQIVE  120
RNRFEENDSI TIWSFRSRDV LCFAIVPSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA114G00014
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2731015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.13e-26B3 family protein