PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA119G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 198aa    MW: 22200.4 Da    PI: 6.0097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA119G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3992.9e-3130123185
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  f+k ltpsdv+k++rlv+pk++ae+h         ++++ +++ l++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++
  AA119G00002  30 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnnsssSSSNDKGMLLSFEDDSGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKELDPGDVVFFHRT 123
                  99***************************9999885555699*************************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-3824123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-3126124IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-2928122No hitNo description
SMARTSM010191.9E-2130138IPR003340B3 DNA binding domain
PfamPF023621.6E-2830124IPR003340B3 DNA binding domain
PROSITE profilePS5086313.40830137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYHSSNTSPP LFSHHHSSTD ITTTTTTPLF EKSLTPSDVG KLNRLVIPKQ HAEKHFPLNN  60
NSSSSSSNDK GMLLSFEDDS GKCWRFRYSY WNSSQSYVLT KGWSRFVKDK ELDPGDVVFF  120
HRTAATAVTE THSIPSPVTV GSSRTVRLFG VNLECQLDDD GDDDTSAVST DVEPPCPDGY  180
YGQNMYYYHL QTTPTMLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4529125798B3 domain-containing transcription factor NGA1
5os9_B2e-4529125798B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA119G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130927.11e-73PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130928.11e-73PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_009130929.11e-73PREDICTED: B3 domain-containing protein At5g06250-like isoform X2
RefseqXP_013723834.11e-73B3 domain-containing protein At5g06250
RefseqXP_013723840.11e-73B3 domain-containing protein At5g06250
SwissprotQ8RYD36e-53Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A3P6AJN62e-72A0A3P6AJN6_BRAOL; Uncharacterized protein
STRINGBra005886.1-P5e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.14e-62B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]