PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA120G00009
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 248aa    MW: 28704.6 Da    PI: 7.4503
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA120G00009genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11118209280
                  EEE-..-HHHHT.T-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
           B3   2 fkvltpsdvlks.grlvlpkkfaeeh..........ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLk.egDfv 80 
                  fk+lt sdv  + +rlvl  k +++h           g+  e++++++  ++g++ e+k+ i+ ++++  vl kGW++Fvka gL+   D++
  AA120G00009 118 FKQLTESDVDGRrCRLVLGMKQVKDHilchleeseiPGVYIEGIDVSVFGPDGKTHEMKFkIWMRNPEIPVLIKGWSKFVKAYGLRkYSDVI 209
                  79******98766****************987766633444999*********9999999556888888****************9445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.84E-17115224No hitNo description
Gene3DG3DSA:2.40.330.104.4E-14115230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-15116223IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0088117226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAKDYPSDES EDSSSSSSDE STEEDSDSSD DESEQGKNGQ QENPKTASVI KKRKYVIKKP  60
EVAINKQHTP RKIVEFDDRE ETLQILLQRL NNGDREIPPL DRIVSKIPNA IEFSRCIFKQ  120
LTESDVDGRR CRLVLGMKQV KDHILCHLEE SEIPGVYIEG IDVSVFGPDG KTHEMKFKIW  180
MRNPEIPVLI KGWSKFVKAY GLRKYSDVIK IWMFRSNQDR KICFAIDSTR FDITKRLSTR  240
ILKNVYKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA120G00009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-35B3 family protein