PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA123G00069
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 300aa    MW: 34878.1 Da    PI: 9.7617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA123G00069genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.54.4e-1718110196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  ffk+l +sd +++++  lp +f++   +k   s +++l+ ++g+sWe+k+   ++s+  y+ +  W +F ++n L + +f++F+++g+++f   v++
  AA123G00069  18 FFKILHSSDLSSENMRALPQDFVRLVPEKDLLSLKMVLRLQWGKSWEIKI--LRNSRFyYMEKHSWDKFISENSLGQHEFLTFTYHGQMCF--GVHI 110
                  99*********************9998888999*****************..888888466669**********************99999..4444 PP
2B333.28.9e-112182891590
                  -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   l +pkkf+ ++   +ees++  + +++g + Wev++    +  r ++++GW+  ++   L + D+++Fkl++r+e 
  AA123G00069 218 FLGIPKKFV-RYL--PEESTMFLIHHPNGkKLWEVTY--LVSETRGTFSGGWSYLARTYPLAVYDVCTFKLIKRNEI 289
                  578******.563..45676777778999678*****..666666669***********************987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1811115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1912114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.09E-1516111No hitNo description
SMARTSM010193.7E-2018114IPR003340B3 DNA binding domain
PROSITE profilePS5086313.3818114IPR003340B3 DNA binding domain
PfamPF023626.7E-1518110IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-15202293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-12203293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.587204297IPR003340B3 DNA binding domain
CDDcd100173.72E-10205287No hitNo description
SMARTSM010193.2E-13207297IPR003340B3 DNA binding domain
PfamPF023624.7E-8218289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKNTDFALSM EEREVPSFFK ILHSSDLSSE NMRALPQDFV RLVPEKDLLS LKMVLRLQWG  60
KSWEIKILRN SRFYYMEKHS WDKFISENSL GQHEFLTFTY HGQMCFGVHI YGKDGKELLR  120
PRNSPSGGFK TEQEKKKKMK QEVKEEVKEE PESSSEVSYL GKRGAESIVT KQEQRTVEST  180
IAKKQKHKEK IDSVPRDFVA RDSVPEFSIT IQKSYLIFLG IPKKFVRYLP EESTMFLIHH  240
PNGKKLWEVT YLVSETRGTF SGGWSYLART YPLAVYDVCT FKLIKRNEIL LTVSSSASSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA123G00069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FK615e-84Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A178UPJ11e-81A0A178UPJ1_ARATH; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-75B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]