PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA123G00108
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 159aa    MW: 17740.7 Da    PI: 4.9186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA123G00108genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11851251055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  AA123G00108  85 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 125
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8575124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1576142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1380138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1181130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-1184129No hitNo description
PfamPF000103.5E-885125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSDDNNRDEE EETGKRKGTQ PKVTKSSITC CSDEDDSSGG PQEVDGSSSK EGDRDGDRDS  60
KALNLNGKTR ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAVHY  120
VKFLQLQIKL LSSDEMWMYA PIAYNGMDIG LDLKLNSLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA123G00108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299327.11e-73transcription factor bHLH84 isoform X2
SwissprotQ7XHI92e-69BH084_ARATH; Transcription factor bHLH84
TrEMBLR0I2S23e-72R0I2S2_9BRAS; Uncharacterized protein
STRINGCagra.9228s0001.1.p3e-73(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-58bHLH family protein