PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA123G00123
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 234aa    MW: 26687.5 Da    PI: 9.4022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA123G00123genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-1173119455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h  +ErrRR+++ ++f  L +l+P +      K +Ka++L  +++Y+k+L+
  AA123G00123  73 DHILAERRRREKLSQRFLALSTLVPGL-----NKRDKASVLGGTIKYLKHLE 119
                  6999**********************8.....5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1669136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.42869118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1673131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-973119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.48E-1274123No hitNo description
SMARTSM003538.4E-1375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQQWQMMMNS STIEELNNNI ISFSSPLLVP HQFETQHSPQ VTTLDSTKPR SYLNQYSNGV  60
QEVMPRGASQ AKDHILAERR RREKLSQRFL ALSTLVPGLN KRDKASVLGG TIKYLKHLEE  120
RVKFLEEQAS QRTIESVVFV NKSTLSTDTD SWSDSITALP EIEVKFSGLN VLIRIHCEKK  180
KGVMETTLAE IENLKLNVIN NSLFTFGSNS IHLTVISQIM VFQTLNYFRE KSPN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782ERRRRE
27883RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA123G00123
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489839.15e-83PREDICTED: transcription factor bHLH25-like isoform X1
SwissprotQ9T0721e-44BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3P6BEX65e-80A0A3P6BEX6_BRAOL; Uncharacterized protein
STRINGBo3g088300.12e-79(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-43bHLH family protein