PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA124G00010
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 124aa    MW: 14353.2 Da    PI: 8.1929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA124G00010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-1717981097
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  ++s  l +p +f e+   +   + t +l+    ++W+v+l  +k+++ +++t+GW+ F+++n+L +g+f++F +dg+++f   v+++
  AA124G00010 17 KTSSESLAIPLSFNEHLRDP--LPLTAKLQGCGPKVWKVNL--KKTQQYIYFTNGWRLFAQENNLTDGEFLTFVYDGSRTF--EVSIY 98
                 4566779******9555544..8899***************..****99**************************997777..67665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-216103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.2398101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-16999No hitNo description
SMARTSM010193.5E-1710101IPR003340B3 DNA binding domain
PfamPF023624.4E-151699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MANNGTLPRF FIGFLSKTSS ESLAIPLSFN EHLRDPLPLT AKLQGCGPKV WKVNLKKTQQ  60
YIYFTNGWRL FAQENNLTDG EFLTFVYDGS RTFEVSIYNR YGCKETRGLV NQQDIMDLDD  120
QWRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-2311033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA124G00010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647917.11e-44B3 domain-containing protein REM20-like
RefseqXP_013647918.11e-44B3 domain-containing protein REM20-like
SwissprotQ8LAV59e-37REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3CTK83e-42A0A0D3CTK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H7B43e-42A0A3P6H7B4_BRAOL; Uncharacterized protein
STRINGBo6g067300.14e-43(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-39B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]