PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA1278G00001
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 240aa    MW: 27078.8 Da    PI: 8.6694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA1278G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30123182159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK+ kg+++pr+YYrCt + gCpv+k+v+r+ ed +++++tYeg+Hnh+
  AA1278G00001 123 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVSqGCPVRKQVQRCLEDMSILITTYEGTHNHT 182
                   58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-33108184IPR003657WRKY domain
SuperFamilySSF1182906.8E-28116184IPR003657WRKY domain
PROSITE profilePS5081129.252118184IPR003657WRKY domain
SMARTSM007749.3E-37123183IPR003657WRKY domain
PfamPF031062.3E-27124181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAGEQILQLQ KEMEHVKQEN ISLRNLVEQT LQDYRSLEMK FPVFIAKPKK FMDLEAFVGE  60
QGKRCSSLSL EQGELGLSLS VRSEESVIRE KKRDENTPRV ISSSPANRKA RVSVRARCET  120
ATMNDGCQWR KYGQKTAKGN PCPRAYYRCT VSQGCPVRKQ VQRCLEDMSI LITTYEGTHN  180
HTLPVGATAM ASTTTTSMSP FLLLDSSDSL SHNSMSFSFD HSSTRPDYVS SSQNTLTWMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-24110186176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA1278G00001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391179.11e-108probable WRKY transcription factor 9
SwissprotQ9C9F01e-106WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3P6BRV81e-109A0A3P6BRV8_BRACM; Uncharacterized protein (Fragment)
STRINGXP_006391179.11e-108(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-83WRKY DNA-binding protein 9